*Supervised student.
2023 CA Oakley, GI Newson*, L Peng, SK Davy. The Symbiodinium proteome under thermal and nutrient stress. Plant and Cell Physiology pcac175.
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2023 AG Mashini*, CA Oakley, S Beepat, L Peng, VM Weis, AR Grossman, SK Davy. The influence of symbiosis on the proteome of the Exaiptasia endosymbiont Breviolum minutum. Microorganisms 11:2 292.
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2023 M Wuerz*, CA Lawson, CA Oakley, M Possell, SP Wilkinson, AR Grossman, VM Weis, DJ Suggett, SK Davy. Symbiont identity impacts the microbiome and volatilome of a model cnidarian–dinoflagellate symbiosis. Biology 12:1014.
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2023 SW Davies, … CA Oakley, et al. Building consensus around the assessment and interpretation of Symbiodiniaceae diversity. PeerJ 11:e15023.
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2022 C Pogoreutz, CA Oakley, N Rädecker, Anny Cárdenas, G Perna, L Peng, SK Davy, DK Ngugi, CR Voolstra. Coral holobiont cues prime Endozoicomonas to a symbiotic lifestyle. The ISME Journal 16: 1883–1895.
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2022 E Camp, T Kahlke, B Signal, CA Oakley, A Lutz, D Suggett, W Leggat. Proteome, metabolome and transcriptome data for three Symbiodiniaceae under ambient and heat stress conditions. Scientific Data 9: 153.
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2022 CA Oakley, S Pontasch, PL Fisher, SP Wilkinson, RA Keyzers, T Krueger, S Dove, O Hoegh-Guldberg, W Leggat, SK Davy. Thylakoid fatty acid composition and response to short-term cold and heat stress differs between high-latitude Symbiodiniaceae. Coral Reefs 41: 343–353.
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2022 IM Ashley*, SA Kitchen, LM Gorman*, AR Grossman, CA Oakley, DJ Suggett, VM Weis, SL Rosset, SK Davy. Genomic conservation and putative downstream functionality of the phosphatidylinositol signalling pathway in the cnidarian–dinoflagellate symbiosis. Frontiers in Microbiology 10.3389/fmicb.2022.1094255.
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2022 M Wuerz*, CA Lawson, M Ueland, CA Oakley, AR Grossman, VM Weis, DJ Suggett, SK Davy. Symbiosis induces unique volatile profiles in the model cnidarian Aiptasia. Journal of Experimental Biology doi/10.1242/jeb.244600.
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2022 AG Mashini*, CA Oakley, AR Grossman, VM Weis, SK Davy. Immunolocalisation of metabolite transporter proteins in a model cnidarian–dinoflagellate symbiosis. Applied and Environmental Microbiology, e00412−22.
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2022 LM Gorman*, G Cui, M Aranda, CA Oakley, AR Grossman, VM Weis, SK Davy. Symbiosis with dinoflagellates alters cnidarian cell-cycle gene expression. Cellular Microbiology 3330160.
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2022 MR Nitschke, SL Rosset, CA Oakley, SG Gardner, EF Camp, DJ Suggett, SK Davy. The diversity and ecology of Symbiodiniaceae: a trait-based review. Advances in Marine Biology 92: 55−127.
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2022 G Tortorelli, CA Oakley, SK Davy, MJH van Oppen, GI McFadden. Cell wall proteomic analysis of the coral photosymbionts Breviolum minutum and Cladocopium goreaui. Journal of Eukaryotic Microbiology 69:e12870.
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2022 JL Matthews*, R Cunning, R Witson-Williams, CA Oakley, A Lutz, U Roessner, AR Grossman, VM Weis, RD Gates, SK Davy. The metabolic significance of symbiont community composition in the coral-algal symbiosis. Applied Env Metabolomics 211–229.
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2022 JK Kihika, SA Wood, L Rhodes, KF Smith, MR Miller, X Pochon, L Thompson, J Butler, J Schattsschneider, CA Oakley, KG Ryan. Cryopreservation of six Symbiodiniaceae genera: assessment of fatty acid profiles in response to increased salinity treatments. Scientific Reports 12:12408.
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2022 TC LaJeunesse, J Wiedenmann, P Casado de Amezúa, I D’Ambra, K Turnham, M Nitschke, CA Oakley, C Spano, V Cubillos, SK Davy, DJ Suggett. Revival of Philozoon Geddes for host-specialized dinoflagellates, ‘zooxanthellae’, in animals from coastal temperate zones of Northern and Southern Hemispheres. Eur J Phycol 57: 2 166–180.
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2021 SL Rosset, CA Oakley, C Ferrier-Pagès, DJ Suggett, VM Weis, SK Davy. The molecular language of the cnidarian–dinoflagellate symbiosis. Trends in Microbiology 4: 320–333.
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2021 Beepat S, SK Davy, CA Oakley, A Mashini, L Peng, JJ Bell. Increased cellular detoxification, cytoskeletal activities and protein transport explain physiological stress response mechanisms in a lagoon sponge. Journal of Experimental Biology 224: jeb242820.
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2020 LM Gorman*, SP Wilkinson, CA Oakley, AR Grossman, VM Weis, SK Davy. Phylogenetic analysis of cell-cycle regulatory proteins within the Symbiodiniaceae. Scientific Reports 10:20473.
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2020 JL Matthews*, R Cunning, R Ritson-Williams, CA Oakley, A Lutz, U Roessner, AR Grossman, VM Weis, RD Gates, SK Davy. Metabolite pools of the reef-building coral Montipora capitata are unaffected by Symbiodiniaceae community composition. Coral Reefs 39 (6), 1727–1737.
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2020 AE Sproles*, CA Oakley, T Krueger, AG Grossman, VM Weis, A Meibom, SK Davy. Sub-cellular imaging shows reduced photosynthetic carbon and increased nitrogen assimilation by the heterologous endosymbiont Durusdinium trenchii in the model cnidarian Aiptasia. Environmental Microbiology 22:9 3741–3753.
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2019 AE Sproles*†, CA Oakley†, JL Matthews*, L Peng, VM Weis, JG Owen, AR Grossman, SK Davy. Proteomics quantifies protein expression changes in a model cnidarian colonized by a thermally tolerant but suboptimal symbiont. The ISME Journal 13: 2334–2345.
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2018 JL Matthews*, CA Oakley, A Lutz, KE Hillyer, U Roessner, AG Grossman, VM Weis, SK Davy. Partner switching and metabolic flux in a model cnidarian–Symbiodinium symbiosis. Proceedings of the Royal Society B: Biological Sciences 285: 20182336.
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2018 CA Oakley, SK Davy. Cellular Biology of Coral Bleaching. In: MJH van Oppen, JM Lough, editors. Coral bleaching: Patterns, processes, causes and consequences. 2nd ed. Berlin: Springer-Verlag Berlin Heidelberg.
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2018 AE Sproles*, NL Kirk, SA Kitchen, CA Oakley, AR Grossman, VM Weis, SK Davy. Phylogenetic characterization of transporter proteins in the cnidarian-dinoflagellate symbiosis. Molecular Phylogenetics and Evolution 120: 307–320.
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2017 JL Matthews*, CM Crowder, CA Oakley, A Lutz, VM Weis, AR Grossman, E Meyer, U Roessner, SK Davy. Optimal nutrient exchange and immune responses operate in partner specificity in the cnidarian-dinoflagellate symbiosis. Proceedings of the National Academy of Sciences of the United States of America 114:50 13194–13199
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2017 CA Oakley, E Durand, S Wilkinson, L Peng, VM Weis, AR Grossman, SK Davy. Thermal shock induces host proteostasis disruption and endoplasmic reticulum stress in the model cnidarian Aiptasia. Journal of Proteome Research 16: 2121–2134
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2016 CA Oakley, MF Ameismeier, L Peng, VM Weis, AR Grossman, SK Davy. Symbiosis induces widespread changes in the proteome of the model cnidarian Aiptasia. Cellular Microbiology 18:7 1009–1023
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2015 JL Matthews*, AE Sproles*, CA Oakley, AR Grossman, VM Weis, SK Davy. Menthol-induced aposymbiosis rapidly and effectively provides experimental cnidarians for symbiosis investigations. Journal of Experimental Biology 219: 306–310
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2014 CA Oakley, BM Hopkinson, GW Schmidt. Mitochondrial terminal alternative oxidase and its enhancement by thermal stress in the coral symbiont Symbiodinium. Coral Reefs 33:2 543–552
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2014 CA Oakley, GW Schmidt, BM Hopkinson. Thermal responses of Symbiodinium photosynthetic carbon assimilation. Coral Reefs 33:2 501–512
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2013 JL Dimond, BL Bingham, G Muller-Parker, CA Oakley. Symbiont physiology and dynamics before and during symbiont shifts in a flexible algal-cnidarian symbiosis. Journal of Phycology 49:6 1074–1083
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2013 CA Oakley, JS Knox. Plant species richness increases resistance to invasion by non-resident plant species during grassland restoration. App. Vegetation Science 16:1 21–28
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2012 CA Oakley, BM Hopkinson, GW Schmidt. A modular system for the measurement of photosynthetic CO2 and O2 gas flux and electron transport in microalgae. Limnology and Oceanography: Methods 10: 968–977
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2011 DW Kemp, CA Oakley, DJ Thornhill, LA Newcomb, GW Schmidt, WK Fitt. Catastrophic mortality on inshore coral reefs of the Florida Keys due to severe low-temperature stress. Global Change Biology 17: 11 3468–3477
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2010 RJ Newton, LE Griffin, KM Bowles, C Meile, S Gifford, CE Givens, EC Howard, E King, CA Oakley, CR Reisch, JM Rinta-Kanto, S Sharma, S Sun, V Varaljay, M Vila-Costa, JR Westrich, MA Moran. Genome characteristics of a generalist marine bacterial lineage. The ISME Journal 1:10 1–15
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Edited Volumes
2022 Coral Reef Ecosystems Theme Issue, Guest Editor. Emerging Topics in Life Sciences 6:1 1-136.